Based on the Rytov approximation and the cross-spectral density approximation for the mutual coherence function of the partially coherent field, the propagation properties of the partially coherent beams with optical vortices in turbulent atmosphere are discussed. The average intensity and the mutual coherence function of the partially coherent vortex beams propagation in weak turbulent atmosphere are obtained. It is shown that the vortex structure of the average cross-spectral density of partially coherent beams has the same helicoidally shape as that of the phase of the fully coherent Laguerre-Gauss beams in free space and the relative intensity of the beam is degraded by optical vortex.