[1] J. Huisken, D. Y. Stainier , “Selective plane illumination microscopy techniques in developmental biology”, Development 136, 1963-1975 (2009).

[2] P. J. Keller, M. B. Ahrens, J. Freeman , “Light-sheet imaging for systems neuroscience”, Nat Methods 12, 27-29 (2015).

[3] P. J. Keller, M. B. Ahrens , “Visualizing whole-brain activity and development at the single-cell level using light-sheet microscopy”, Neuron 85, 462-483 (2015), doi:10.1016/j.neuron.2014.12.039.

[4] K. Becker, N. Jahrling, E. R. Kramer, F. Schnorrer, H. U. Dodt , “Ultramicroscopy: 3D reconstruction of large microscopical specimens”, J. Biophoton. 1, 36-42 (2008), doi:10.1002/jbio.200710011.

[5] P. A. Santi et al., “Thin-sheet laser imaging microscopy for optical sectioning of thick tissues”, BioTechniques 46, 287-294 (2009), doi:10.2144/000113087. ISI, Google Scholar

[6] P. G. Pitrone et al., “OpenSPIM: An open-access light-sheet microscopy platform”, Nat. Methods 10, 598-599 (2013).

[7] Z. Guan et al., “Compact plane illumination plugin device to enable light sheet fluorescence imaging of multi-cellular organisms on an inverted wide-field microscope”, Biomed. Opt. Express 7, 194-208 (2016).

[8] J. Huisken, J. Swoger, F. Del Bene, J. Wittbrodt, E. H. Stelzer , “Optical sectioning deep inside live embryos by selective plane illumination microscopy”, Science 305, 1007-1009 (2004).

[9] J. Huisken, D. Y. Stainier , “Even fluorescence excitation by multidirectional selective plane illumination microscopy (mSPIM)”, Opt. Lett. 32, 2608-2610 (2007).

[10] P. J. Keller et al., “Fast, high-contrast imaging of animal development with scanneds light sheet-based structured-illumination microscopy”, Nat. Methods 7, 637-642 (2010), doi:10.1038/nmeth.1476.

[11] P. J. Keller, A. D. Schmidt, J. Wittbrodt, E. H. Stelzer , “Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy”, Science 322, 1065-1069 (2008).

[12] R. Tomer, K. Khairy, F. Amat, P. J. Keller , “Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy”, Nat. Methods 9, 755-763 (2012).

[13] T. A. Planchon et al., “Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination”, Nat. Methods 8, 417-423 (2011), doi:10.1038/nmeth.1586.

[14] B. C. Chen et al., “Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution”, Science 346, 1257998 (2014), doi:10.1126/science.1257998.

[15] R. Arnaout et al., “Zebrafish model for human long QT syndrome”, Proc. Natl. Acad. Sci. USA 104, 11316-11321 (2007), doi:10.1073/pnas.0702724104.

[16] B. Schmid et al., “High-speed panoramic light-sheet microscopy reveals global endodermal cell dynamics”, Nat. Commun. 4, 2207 (2013), doi:10.1038/ncomms3207.

[17] T. F. Holekamp, D. Turaga, T. E. Holy , “Fast three-dimensional fluorescence imaging of activity in neural populations by objective-coupled planar illumination microscopy”, Neuron 57, 661-672 (2008), doi:10.1016/j.neuron.2008.01.011.

[18] J. Lee et al., “4-dimensional light-sheet microscopy to elucidate shear stress modulation of cardiac trabeculation”, J. Clin. Invest. 126, 1679 (2016).

[19] M. Mickoleit et al., “High-resolution reconstruction of the beating zebrafish heart”, Nat. Methods 11, 919-922 (2014).

[20] F. Pampaloni, N. Ansari, E. H. Stelzer , “High-resolution deep imaging of live cellular spheroids with light-sheet-based fluorescence microscopy”, Cell Tissue Res. 352, 161-177 (2013).

[21] H. U. Dodt et al., “Ultramicroscopy: Three-dimensional visualization of neuronal networks in the whole mouse brain”, Nat. Methods 4, 331-336 (2007), doi:10.1038/nmeth1036.

[22] R. Tomer, L. Ye, B. Hsueh, K. Deisseroth , “Advanced CLARITY for rapid and high-resolution imaging of intact tissues”, Nat. Protocols 9, 1682-1697 (2014).

[23] E. A. Susaki et al., “Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging”, Nat. Protocols 10, 1709-1727 (2015).

[24] C. Pan et al., “Shrinkage-mediated imaging of entire organs and organisms using uDISCO”, Nat. Methods (2016).

[25] E. A. Susaki et al., “Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis”, Cell 157, 726-739 (2014).

[26] T. Quan et al., “NeuroGPS-Tree: automatic reconstruction of large-scale neuronal populations with dense neurites”, Nat. Methods 13, 12142 (2016). ISI, Google Scholar

[27] H. Gong et al., “High-throughput dual-colour precision imaging for brain-wide connectome with cytoarchitectonic landmarks at the cellular level”, Nat. Commun. 7 (2016).

[28] F. Helmchen, W. Denk , “Deep tissue two-photon microscopy”, Nat. Methods 2, 932-940 (2005).

[29] N. G. Horton et al., “ In vivo three-photon microscopy of subcortical structures within an intact mouse brain”, Nat. Photon. 7, 205-209 (2013).

[30] J. Swoger, P. Verveer, K. Greger, J. Huisken, E. H. Stelzer , “Multi-view image fusion improves resolution in three-dimensional microscopy”, Opt. Express 15, 8029-8042 (2007).

[31] S. Preibisch, S. Saalfeld, J. Schindelin, P. Tomancak , “Software for bead-based registration of selective plane illumination microscopy data”, Nat. Methods 7, 418-419 (2010).

[32] S. Preibisch et al., “Efficient Bayesian-based multiview deconvolution”, Nat. Methods 11, 645-648 (2014).

[33] M. B. Ahrens, M. B. Orger, D. N. Robson, J. M. Li, P. J. Keller , “Whole-brain functional imaging at cellular resolution using light-sheet microscopy”, Nat. Methods 10, 413-420 (2013), doi:10.1038/nmeth.2434.

[34] K. Becker et al., “Reduction of photo bleaching and long term archiving of chemically cleared GFP-expressing mouse brains”, PloS one 9, e114149 (2014).